Kev,
I agree, In all my years on working on these type bikes I would not use the extra vacuum lines. I ran into issues like this years ago when we where chasing our tails around because the equipment and sensors on the bike are so sensitive. On my own bikes Ive always taken the nipples off, hooked up the measuring device, synchronize the TB or carbs and put back on the factory nipples.. People need to keep in mind that the connectors like T connectors have an ID and OD.. The ID can effect the vacuum off one cylinder and throw off the sync of the other. The ID of the tube can do it aswell... I under stand it makes it really simple to re adjust but in my personal experience its not as accurate... I keep reading all these post with popping, possible leaking, Etc, Etc... Take those hoses off. The TB sync is not something that needs to be done that often. If your going to play with it, make sure you put the little rubber nipples back on and go that rout... If the hoses are off, and the end user has issues we can eliminate the possibilities of those hoses, Etc. That opens the door for accurate situations... Of course this just has been my experience.
Factory ECM maps. Ive just put on a PCV. This next week I will be installing the Auto Tune. With this unit I can install the factory map back into the PCV, ride the bike and then down load the active auto tune. This should give the parameters of the stock map live and tell me the differences across the board and even in the closed loop sections (cells) on the system. We should be able to easily see what the 'stock' ECM is calling for across the board and how that differs from the stock map. Hence we can determine if there is a lead in map fallowed by a master type map probably mid way though the RPM and load range in the closed loop (non) Adjustable (is adjustable) section. After knowing this I can utilize the PCV and the AT to actively switch and open the parameters of the AFE percentages and tune the bike with a perfect FA*..........
Devin.. I spoke to Roy today for an hour again. I learned some new really cool stuff. This dang thing can do just about anything you can think of. After I get a *performance map dialed in and a *touring map dialed in im going to have two switches. One will cut the power to the AT and the second with then be able to toggle on the fly between my Touring map and my performance map. If I ever need to have the AT adjust anything I can then disable the 'on the fly map' and turn on the AT and let it do its thing to re-tune the map on the go..... How cool....